Peer-Reviewed Journal Publications


  1. H. R. G. W. Verstraete, M. Heisler, M. J. Ju, D. Wahl, L. Bliek, J. Kalkman, S. Bonora, Y. Jian, M. Verhaegen, M. V. Sarunic, "Wavefront sensorless adaptive optics OCT with the DONE algorithm for in vivo human retinal imaging," Biomedical Optics Express 8(4), (2017): 2261. (Article link)

  2. M. Heisler, S. Lee, Z. Mammo, Y. Jian, M.J. Ju, A. Merkur, E. Navajas, C. Balaratnasingam, M.F. Beg, M.V. Sarunic, "Strip-based registration of serially acquired optical coherence tomography angiography," Journal of Biomedical Optics 22(3), (2017): (Article link)

  3. S. Lee, M. Heisler, P.J. Mackenzie, M.V. Sarunic, M.F. Beg, "Quantifying Variability in Longitudinal Peripapillary RNFL and Choroidal Layer Thickness Using Surface Based Registration of OCT Images," Translational Vision Science and Technology 6(11),(2017): (Article link)

  4. M. Heisler, W.L. Quong, S. Lee, S. Han, M.F. Beg, M.V. Sarunic, P.J. Mackenzie, "Anterior Segment Optical Coherence Tomography for Targeted Transconjunctival Suture Placement in Overfiltering Trabeculectomy Blebs," Journal of Glaucoma, (2017): (Article link)

  5. S. Lee, N. Charon, B. Charlier, K. Popuri, E. Lebed, M.V. Sarunic, A. Trouvé, M.F. Beg, "Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework," Medical Image Analysis 35, (2017): 570:581. (Article link)

  6. Z. Mammo, M. Heisler, C. Balaratnasingam, S. Lee, D.Y. Yu, P. Mackenzie, S. Schendel, A. Merkur, A. Kirker, D. Albiani, E. Navajas, M.F. Beg, W. Morgan, M.V. Sarunic, "Quantitative Optical Coherence Tomography Angiography of Radial Peripapillary Capillaries in Glaucoma, Glaucoma Suspect and Normal Eyes," American Journal of Ophthalmology 170, (2016): 41-49. (Article link)

  7. M. Cua, D.J. Wahl, Y. Zhao, S. Lee, S. Bonora, R.J. Zawadzki, Y. Jian, M.V. Sarunic, "Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging," Scientific Reports 6, (2016): 32223. (Article link)

  8. P. Prentašic, M. Heisler, Z. Mammo, S. Lee, A. Merkur, E. Navajas, M.F. Beg, M. Šarunic, S. Loncaric, "Segmentation of the foveal microvasculature using deep learning networks," Journal of Biomedical Optics 21, (2016): 075008. (Article link)

  9. Y. Jian, S. Lee, M.J. Ju, M. Heisler, W. Ding, R.J. Zawadzki, S. Bonora, M.V. Sarunic, "Lens-based wavefront sensorless adaptive optics swept source OCT," Scientific Reports 6, (2016): 27620. (Article link)

  10. D.J. Wahl, Y. Jian, S. Bonora, R.J. Zawadzki, M.V. Sarunic, "Wavefront sensorless adaptive optics fluorescence biomicroscope for in vivo retinal imaging in mice," Biomedical Optics Express 7, no. 1 (2016): 1-12. (Article link)

  11. P. Zhang, A. Zam, Y. Jian, X. Wang, Y. Li, K.S. Lam, M.E. Burns, M.V. Sarunic, E.N. Pugh Jr, R.J. Zawadzki.. "In vivo wide-field multispectral scanning laser ophthalmoscopy-optical coherence tomography mouse retinal imager: longitudinal imaging of ganglion cells, microglia, and Müller glia, and mapping of the mouse retinal and choroidal vasculature." Journal of Biomedical Optics 20, no. 12 (2015): 126005. (Article link)

  12. S. Bonora, Y. Jian, P. Zhang, A. Zam, E.N. Pugh Jr, R.J. Zawadzki, M.V. Sarunic.. "Wavefront correction and high-resolution in vivo OCT imaging with an objective integrated multi-actuator adaptive lens." Optics Express 23, no. 17 (2015): 21931-41. (Article link)

  13. P.K. Yu, C. Balaratnasingam, J. Xu, W.H. Morgam, Z. Mammo, S. Han, P. Mackenzie, A. Merkur, A. Kirker, D. Albiani, M.V. Sarunic, D. Yu.. "Label-Free Density Measurements of Radial Peripapillary Capillaries in the Human Retina." PLoS One vol. 10, no. 8 (2015). (Article link)

  14. Z. Mammo, C. Balaratnasingam, P. Yu, J. Xu, M. Heisler, P. Mackenzie, A. Merkur, A. Kirker, D. Albiani, K.B. Freund, M.V. Sarunic, D. Yu.. "Quantitative Noninvasive Angiography of the Fovea Centralis Using Speckle Variance Optical Coherence Tomography." Investigative ophthalmology & visual science vol. 56, no. 9 p. 5074-86 (2015). (Article link)

  15. P.E. Tan, C. Balaratnasingam, J. Xu, Z. Mammo, S.X. Han, P. Mackenzie, A.W. Kirker, D. Albiani, A.B. Merkur, M.V. Sarunic, D. Yu.. "Quantitative Comparison of Retinal Capillary Images Derived By Speckle Variance Optical Coherence Tomography With Histology." Investigative ophthalmology & visual science vol. 56, no. 6 p. 3989-96 (2015). (Article link)

  16. G. Chan, C. Balaratnasingam, J. Xu, Z. Mammo, S. Han, P. Mackenzie, A. Merkur, A. Kirker, D. Albiani, M.V. Sarunic, D. Yu.. "In vivo optical imaging of human retinal capillary networks using speckle variance optical coherence tomography with quantitative clinico-histological correlation." Microvascular Research (2015). (Article link)

  17. J. Xu, S. Han, C. Balaratnasingam, Z. Mammo, K.S.K. Wong, S. Lee, M. Cua, M. Young, A. Kirker, D. Albiani, F. Forooghian, P. Mackenzie, A. Merkur, D. Yu, M.V. Sarunic.. "Retinal angiography with real-time speckle variance optical coherence tomography." British Journal of Ophthalmology (2015). (Article link)

  18. K.S.K. Wong, Y. Jian, M. Cua, S. Bonora, R.J. Zawadzki, and M.V. Sarunic. "In vivo imaging of human photoreceptor mosaic with wavefront sensorless adaptive optics optical coherence tomography." Biomedical Optics Express 6, no. 2 (2015): 580-590. (Article link)

  19. M. Cua, E. Lin, L. Lee, X. Sheng, K.S.K. Wong, G.F. Tibbits, M.F. Beg, M.V. Sarunic. "Morphological phenotyping of mouse hearts using optical coherence tomography." Journal of biomedical optics 19, no. 11 (2014). (Article link)

  20. S. Lee, S.X. Han, M. Young, M.F. Beg, M.V. Sarunic, P.J. Mackenzie. "Optic Nerve Head and Peripapillary Morphometrics in Myopic Glaucoma." Investigative ophthalmology & visual science vol. 55, no. 7 p. 4378-4393 (2014). (Article link)

  21. J. Xu, K. Wong, Y. Jian, and M.V. Sarunic. "Real-time acquisition and display of flow contrast using speckle variance optical coherence tomography in a graphics processing unit." Journal of biomedical optics 19, no. 2 (2014). (Article link)

  22. Y. Jian, J. Xu, M.A. Gradowski, S. Bonora, R.J. Zawadzki, and M.V. Sarunic. "Wavefront sensorless adaptive optics optical coherence tomography for in vivo retinal imaging in mice." Biomedical Optics Express 5, no. 2 (2014): 547-559. (Article link)

  23. L.L. Molday, H. Djajadi, P. Yan, L. Szczygiel, S.L. Boye, V.A. Chiodo, K. Gregory-Evans, M.V. Sarunic, W.W. Hauswirth, R.S. Molday, “RD3 gene delivery restores guanylate cyclase localization and rescues photoreceptors in the Rd3 mouse model of Leber congenital amaurosis 12”, Hum Mol Genet, E-pub ahead of print (2013). (Article link)

  24. Ding, Weiguang, Mei Young, Serge Bourgault, Sieun Lee, David A. Albiani, Andrew W. Kirker, Farzin Forooghian, Marinko V. Sarunic, Andrew B. Merkur, and Mirza Faisal Beg. "Automatic detection of subretinal fluid and sub-retinal pigment epithelium fluid in optical coherence tomography images." In Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE, pp. 7388-7391. IEEE (2013). (Article link)

  25. Lee S, Fallah N, Forooghian F, Ko A, Pakzad-Vaezi K, Merkur AB, Kirker AW, Albiani DA, Young M, Sarunic MV, Beg M, "Comparative analysis of repeatability of manual and automated choroidal thickness measurements in nonneovascular age-related macular degeneration." Investigative ophthalmology & visual science vol. 54 (4) p. 2864-71 (2013). (Article link)

  26. Sanjay Asrani, Mei Young, Jing Xu, Marinko V Sarunic, "Imaging of Ocular Angle Structures with Fourier Domain Optical Coherence Tomography." J Current Glau Prac 2013;7(1):00-00. (Article link)

  27. Y. Jian, R.J. Zawadzki, M.V. Sarunic, “Adaptive Optics Optical Coherence Tomography for In Vivo Mouse Retinal Imaging”, Journal of biomedical optics 18, no. 5 (2013): 056007-056007. (Article link)

  28. E. Lebed, S. Lee, M.V. Sarunic, M.F. Beg, “Rapid Radial optical coherence tomography image acquisition”, J. Biomedical Optics18(3):36004 (2013). (Article link)

  29. A. Wu, E. Lebed, M.V. Sarunic, M.F. Beg, “Quantitative evaluation of transform domains for compressive sampling-based recovery of sparsely sampled volumetric OCT images,” IEEE Tans. Bio-Medical Engineering 60 (2):470-8, PMID:22614516 Feb (2013). (Article link)

  30. Y. Jian, K. Wong, M.V. Sarunic, “GPU Accelerated OCT Processing at Megahertz Axial Scan Rate and High Resolution Video Rate Volumetric Rendering”, J. Biomedical Optics, 18(2):26002 (2013). (Article link)

  31. M. Young, S. Lee, M. Rateb, M.F. Beg, M.V. Sarunic, P.J. Mackenzie, “Comparison of the Clinical Disc Margin Seen in Stereo Disc Photographs to Neural Canal Opening Seen in Optical Coherence Tomography Images”, accepted at Journal of Glaucoma, Nov 5 (2012).

  32. M. Young, E. Lebed, Y. Jian, P.J. Mackenzie, M.F. Beg, M.V. Sarunic, “Real-time high-speed volumetric imaging using compressive sampling optical coherence tomography”, Biomedical Optics Express 2 (9), 2690-97 (2011). (Article link)

  33. J. Li, P. Bloch, J. Xu, M. V. Sarunic, L. Shannon, “Performance and scalability of Fourier domain optical coherence tomography acceleration using graphics processing units”, Applied Optics, Vol. 50 Issue 13, pp.1832-1838 (2011). (Article link)

  34. A. St. Quintin, L. K. Merhi, M. V. Sarunic, “Spectral Domain Fluorescence Coherence Phase Microscopy”, Applied Optics Vol. 50 Issue 12, pp.1798-1804 (2011). (Article link)

  35. S. Lee, M. Young, M. V. Sarunic, M. F. Beg, "End-to-end pipeline for spectral domain optical coherence tomography and morphometric analysis of human optic nerve head." Journal of Medical and Biomedical Engineering 31 (12), 111-120 (2011). (Article link)

  36. A. Yazdanpanah, G. Hamarneh, B. Smith, M. V. Sarunic, “Automated Segmentation of Intra-Retinal Layers from Optical Coherence Tomography Images using an Active Contour Approach”, IEEE Trans. on Medical Imaging, 30 (2) pp. 484-96 (2011). (Article link)

  37. Y. Bai, Z. Shi, J. Xu, P. Dergham, A. Galan-Garcia, A. Cantor, S. Mahapatra, H. M. Mehta, S.B. Woo, M. V. Sarunic, K.E. Neet, H.U. Saragovi, “In chronic and in acute models of neurodegeneration TrkA activity is neuroprotective while p75NTR activity is neurotoxic through a paracrine mechanism”, Journal of Biological Chemistry. 285 (50) pp. 39392-400 (2010). (Article link)

  38. M. V. Sarunic, A. Yazdanpanah, E. Gibson, J. Xu, Y. Bai, S. Lee, H. U. Saragovi, and M. F. Beg, "Longitudinal study of retinal degeneration in a rat using spectral domain optical coherence tomography," Opt. Express 18, 23435-23441 (2010). (Article link)

  39. E. Lebed, P.J. Mackenzie, M. V. Sarunic, M.F. Beg, “Rapid Volumetric OCT Image Acquisition Using Compressive Sampling”, Opt. Express 18 (20), 21003-21012 (2010). (Article link)

  40. E. Gibson, M. Young, M. V. Sarunic, M.F. Beg, “Optic Nerve Head Registration via Hemispherical Surface and Volume Registration”, IEEE Transactions on Biomedical Engineering. 57 (10) 2592-95 (2010). (Article link)

  41. Y. Bai, J. Xu, F. Brahimi, Y. Zhuo, M. V. Sarunic, H.U. Saragovi, “An agonistic anti-TrkB mAb, but not BDNF, protects RGCs and retinal structure from acute or chronic neurodegeneration in vivo”, Invest Ophthalmol Vis Sci., 51 (9): 4722-31 (2010). PMID: 20357199. (Article link)

  42. D. C. Lee, J. Xu, M. V. Sarunic, O.L. Moritz, “Fourier Domain Optical Coherence Tomography (Fd-Oct) As A Non-Invasive Means For Detection Of Retinal Degeneration In Xenopus Laevis Tadpoles In Vivo”, Invest Ophthalmol Vis Sci., 51 (2): 1066-70 (2010). PMID: 19741241. (Article link)

  43. J. Xu, L.L. Molday, R.S. Molday, M. V. Sarunic, “In vivo imaging of the mouse model of X-linked juvenile retinoschisis with fourier domain optical coherence tomography”, Invest Ophthalmol Vis Sci., 50 (6): 2989-93 (2009). PMID: 19182246. (Article link)

  44. S. Asrani, M. V. Sarunic, J. A. Izatt, “Detailed Visualization of the Anterior Segment Using Fourier-Domain Optical Coherence Tomography,” Archives of Ophthalmology, 126 (6): 765-71 (2008). PMID: 18541838. (Article link)

  45. M. V. Sarunic, S. Asrani, and J. A. Izatt, “Imaging the Ocular Anterior Segment with Real time Extended Range Fourier Domain Optical Coherence Tomography,” Archives of Ophthalmology, 126 (4): 537-542 (2008). PMID 18413525. (Article link)

  46. S. Han, M. V. Sarunic, J. Wu, M. Humayun, C. Yang, “Hand-Held Forward-Imaging Needle Endoscope for Ophthalmic OCT Inspection”, Journal of Biomedical Optics 13, 020505 (2008). PMID: 18465947. (Article link)

  47. E. J. McDowell, M. V. Sarunic, Z. Yaqoob, and C. Yang, “SNR enhancement through phase dependent signal reconstruction algorithms for phase separated interferometric signals,” Opt. Express 15, 10103-10122 (2007. (Article link)

  48. M. V. Sarunic, B. E. Applegate, and J. A. Izatt, “Real-time quadrature projection complex conjugate resolved Fourier domain optical coherence tomography,” Opt. Letters, 31 (16), p2426-2428 (2006). PMID: 16880844. (Article link)

  49. M. V. Sarunic, S. H. Weinberg, J. A. Izatt, “Full Field Swept Source Phase Microscopy,” Opt. Letters, 31 (10), p1462-1464 (2006). PMID: 16642139. (Article link)

  50. M. V. Sarunic, B. E. Applegate, J. A. Izatt, “Spectral domain second harmonic optical coherence tomography,” Opt. Letters, 30 (18), p2391-2393 (2005). PMID: 16196329.  (Article link)

  51. M. V. Sarunic, M. A. Choma, C. Yang, J.A. Izatt, “Instantaneous Complex Conjugate Resolved Fourier Domain & Swept-Source OCT Using 3x3 Couplers,” Opt. Express 13(3), p957-967 (2005). (Article link)

  52. S. Yazdanfar, C. H. Yang, M. V. Sarunic, and J. A. Izatt, “Frequency estimation precision in Doppler optical coherence tomography using the Cramer-Rao lower bound,” Opt. Express 13 (2), p410 (2005). (Article link)

  53. M. A. Choma, M. V. Sarunic, C. Yang, and J. A. Izatt, “Sensitivity advantage of swept-source and Fourier-domain optical coherence tomography,” Opt. Express 11 (18), p2183-2185 (2003). (Article link)

Refereed Conference Proceedings


  1. J. Mocci, M. Cua, S. Lee, Y. Jian, P. Pozzi, M. Quintavalla, C. Trestino, H. Verstraete, D. Wahl, R. Muradore, R. J. Zawadzki, M. Verhaegen, M. V. Sarunic, S. Bonora, “Wavefront control with a multi-actuator adaptive Lens in imaging applications,” Proc. SPIE 10073, Adaptive Optics and Wavefront Control for Biological Systems III, 1007302 Feb 21, (2017).
  2. D. J. Wahl, S. Bonora, O. S. Mata, B. K. Haunerland, R. J. Zawadzki, M. V. Sarunic, Y. Jian, “Wavefront sensorless approaches to adaptive optics for in vivo fluorescence imaging of mouse retina,” SPIE 9717, Adaptive Optics and Wavefront Control for Biological Systems II, 97170A Mar 15, (2016).
  3. Y. Jian, S. Lee, M. Cua, D. Miao, S. Bonora, R. J. Zawadzki, M. V. Sarunic, “Adaptive optics OCT using 1060nm swept source and dual deformable lenses for human retinal imaging,” Proc. SPIE 9697, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XX, 96970W Mar 8, (2016).
  4. J. Xu, K. S. K. Wong, V. Wong, M. Heisler, S. Lee, E. M. Cua, Y. Jian, M. V. Sarunic, “Enhancing the visualization of human retina vascular networks by Graphics Processing Unit accelerated speckle variance OCT and graph cut retinal layer segmentation,” Proc. SPIE 9312, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIX, 93122H Mar 26, (2015).
  5. M. Cua, X. Liu, D. Miao, S. Lee, S. Lee, S. Bonora, R. J. Zawadzki, P. J. Mackenzie, Y. Jian, M. V. Sarunic, “Automatic optimization high-speed high-resolution OCT retinal imaging at 1μm,” Proc. SPIE 9307, Ophthalmic Technologies XXV, 93071D Mar 20, (2015).
  6. S. Lee, M. Young, M.F. Beg, M. V. Sarunic, “Segmentation of the macular choroid in OCT images acquired at 830nm and 1060nm,” European Conference on Biomedical Optics, Proc. SPIE 8802, Optical Coherence Tomography and Coherence Techniques VI, 88020J June 18, (2013).
  7. Y. Jian, K. Wong, M.V. Sarunic "GPU accelerated OCT processing at megahertz axial scan rate and high resolution video rate volumetric rendering" Paper 8571-33 accepted for presentation at Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVII, SPIE BIOS, Feb 5, 2013.
  8. Y. Jian, J. Xu, R.J. Zawadzki, M.V. Sarunic " Ultrahigh-speed ultrahigh-resolution adaptive optics: optical coherence tomography system for in-vivo small animal retinal imaging" Paper 8571-62 accepted for presentation at Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVII, SPIE BIOS, Feb 6, 2013.
  9. Y. Jian, A. Issaei, R. J. Zawadzki, M.V. Sarunic, “Adaptive optics: optical coherence tomography system for in-vivo imaging of the mouse retina”, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIV, Photonics West, J. A. Izatt; J. G. Fujimoto; V. V. Tuchin, Editors, Proc. SPIE, Vol. 8213, (2012).
  10. A. Issaei, L. Szczygiel, M.V. Sarunic, "Integrated scanning laser ophthalmoscopy and optical coherence tomography for quantitative multimodal imaging of retinal degeneration and autofluorescence," Multimodal Biomedical Imaging VI, Photonics West, F. S. Azar, Becton, Dickinson and Co.; X. Intes, Rensselaer Polytechnic Institute, Proc. SPIE, vol. 7892, (2011).
  11. S. Lee, M. Young, P.J. Mackenzie, M.F. Beg, M.V. Sarunic, "Morphometry of the myopic optic nerve head using Fourier domain optical coherence tomography," Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIV, Photonics West, J. G. Fujimoto; J. A. Izatt; V. V. Tuchin, Editors, Proc. SPIE, Vol. 7889, (2011).
  12. M. Young, S. Lee, E. Gibson, K. Hsu, M.F. Beg, P.J. Mackenzie, M.V. Sarunic, “Morphometric analysis of the optic nerve head with optical coherence tomography,” Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine XII, Photonics West, J. A. Izatt; J. G. Fujimoto; V.V. Tuchin, Editors, Proc. SPIE, Vol. 7554, 75542L, (2010).
  13. A. Yazdanpanah, G. Hamarneh, B. Smith, M.V. Sarunic, Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach, accepted for presentation at Medical Image Computing and Computer Assisted Intervention (MICCAI), Sept 20-24, 2009.
  14. N. Javaheri, L. L. Moldy, J. Xu,  R. S. Molday, M. V. Sarunic, “Imaging retinal degeneration in mice by combining Fourier domain optical coherence tomography and fluorescent scanning laser ophthalmoscopy”, Multimodal Biomedical Imaging IV, Fred S. Azar; Xavier Intes, Editors, Proc. of SPIE Vol. 7171 (2009).
  15. J. Xu, M.H. Khorasani, J.N.B. Koo, M. V. Sarunic, “Spectrometer based Fourier domain optical coherence tomography of the mouse retina”, Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine XII, Photonics Joseph A. Izatt; James G. Fujimoto; Valery V. Tuchin, Editors, Proc. of SPIE Vol. 6847 p. 31 (2008).
  16. M. V. Sarunic, J. Wu, M. Humayun, C. Yang, “Endoscopic Optical Coherence Tomography of the Retina at 1310 nm Using Paired-Angle-Rotating Scanning”, Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine XI, James G. Fujimoto; Joseph A. Izatt; Valery V. Tuchin, Editors, Vol. 6429 p.11 (2007).
  17. R.J. Zawadzki, B.A. Bower, M. Zhao, M. V. Sarunic, S. Laut, J.S. Werner, J.A. Izatt, “Exposure time dependence of image quality in high-speed retinal in vivo Fourier Domain OCT,” Proc. SPIE Vol. 5688, p. 45-52, Ophthalmic Technologies XV; Fabrice Manns, Per G. Soederberg, A. Ho, B. E. Stuck, M. Belkin; Eds. (2005).
  18. B.A. Bower, M. Zhao, Y. Wang, A. Chu, R.J. Zawadzki, M. V. Sarunic, J.A. Izatt, “Rapid volumetric imaging of the human retina in vivo using a low-cost spectral domain optical coherence tomography system,” Proc. SPIE Vol. 5690, p. 79-84, Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine IX; Valery V. Tuchin, Joseph A. Izatt, James G. Fujimoto; Eds. (2005).
  19. B.E. Applegate, M. V. Sarunic, C. Yang, J.A. Izatt, “Molecular contrast optical coherence tomography: SNR comparison of techniques and introduction of ground state recovery pump-probe OCT,” Proc. SPIE Vol. 5690, p. 182-186, Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine IX; Valery V. Tuchin, Joseph A. Izatt, James G. Fujimoto; Eds. (2005).
  20. M. V. Sarunic, B.E. Applegate, Joseph A Izatt, “Spectral domain second harmonic optical coherence tomography,” Proc. SPIE Vol. 5700, p. 218-225, Multiphoton Microscopy in the Biomedical Sciences V; Ammasi Periasamy, Peter T. C. So; Eds. (2005).
  21. M. V. Sarunic, M.A. Choma, Changhuei Yang, Joseph A Izatt, “Instantaneous complex spectral domain OCT using 3x3 fiber couplers,” Proc. SPIE Vol. 5316, p. 241-247, Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine VIII; V. V. Tuchin, J. A. Izatt, J. G. Fujimoto; Eds. (2004).
  22. G.H. Chapman, R.Y. Tu, M. V. Sarunic, “Bi/In bimetallic thermal resists for microfabrication, photomasks, and micromachining applications,” Proc. SPIE Vol. 4690, p. 465-476, Advances in Resist Technology and Processing XIX; T. H. Fedynyshyn; Ed. (2002).
  23. R.Y. Tu, G.H. Chapman, M. V. Sarunic, “Bimetallic thermal activated films for microfabrication, photomasks, and data storage,” Proc. SPIE Vol. 4637, p. 330-340, Photon Processing in Microelectronics and Photonics; K. Sugioka, M. C. Gower, R. F. Haglund, Jr., A. Pique, F. Traeger, J. J. Dubowski, W. Hoving; Eds. (2002).
  24. G.H. Chapman, R.Y. Tu, M. V. Sarunic, J. Dhaliwal, “BiIn: a sensitive bimetallic thermal resist,” Proc. SPIE Vol. 4345, p. 557-568, Advances in Resist Technology and Processing XVIII; F.M. Houlihan; Ed. (2001).
  25. M. V. Sarunic, G.H. Chapman, R.Y. Tu, “Prototype laser-activated bimetallic thermal resist for microfabrication,” Proc. SPIE Vol. 4274, p. 183-193, Laser Applications in Microelectronic and Optoelectronic Manufacturing VI; Malcolm C. Gower, Henry Helvajian, Koji Sugioka, Jan J. Dubowski; Eds. (2001).

Conference Presentations


  1. M. J. Ju, M. Heisler, R. J. Zawadzki, S. Bonora, Y. Jian, M.V. Sarunic, "Wide-field human photoreceptor morphological analysis using phaseresolved sensorless adaptive optics swept source OCT," presented at SPIE BIOS in Ophthalmic Technologies XXVII, Photonics West, Jan 27- Feb 1, 2017.
  2. D. Wahl, M. Cua, S. Lee, S. Bonora, R. J. Zawadzki, Y. Jian, M.V. Sarunic, "Wavefront sensorless adaptive optics optical coherence tomography for multiphoton retinal imaging," presented at SPIE BIOS in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXI, Photonics West, Jan 27- Feb 1, 2017.
  3. M. Heisler, S. Lee, Z. Mammo, Y. Jian, M. J. Ju, D. Miao, E. Raposo, D. J. Wahl, A. Merkur, E. Navajas, C. Balaratnasingam, M. F. Beg, M.V. Sarunic, "GPU accelerated optical coherence tomography angiography using stripbased registration," presented at SPIE BIOS in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXI, Photonics West, Jan 27- Feb 1, 2017.
  4. Y. Jian, H. R. G. W. Verstraete, M. Heisler, M. J. Ju, D. J. Wahl, L. Bliek, J. Kalkman, S. Bonora, M. Verhaegen, M.V. Sarunic, "Data-based online nonlinear extremumseeker for wavefront sensorless adaptive optics OCT," presented at SPIE BIOS in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXI, Photonics West, Jan 27- Feb 1, 2017.
  5. J. Mocci, M. Cua, S. Lee, Y. Jian, P. Pozzi, M. Quintavalla, C. Trestino, H. Verstraete, D. Wahl, R. Muradore, R. J. Zawadzki, M. Verhaegen, M. V. Sarunic, S. Bonora, “Wavefront control with a multi-actuator adaptive Lens in imaging applications,” presented at SPIE BIOS in Adaptive Optics and Wavefront Control for Biological Systems III, Photonics West, Jan 27- Feb 1, 2017.
  6. H. R. G. W. Verstraete, M. Heisler, M. J. Ju, D. J. Wahl, L. Bliek, J. Kalkman, S. Bonora, M. V. Sarunic, M. Verhaegen, Y. Jian, “Real time optimization algorithm for wavefront sensorless adaptive optics optical coherence tomography,” presented at SPIE BIOS in Adaptive Optics and Wavefront Control for Biological Systems III, Photonics West, Jan 27- Feb 1, 2017.
  7. C. Huang, D. J. Wahl, S. Bonora, Y. Jian, M. V. Sarunic, “Pupil segmentation adaptive optics for invivo mouse retinal fluorescence imaging,” presented at SPIE BIOS in Adaptive Optics and Wavefront Control for Biological Systems III, Photonics West, Jan 27- Feb 1, 2017.
  8. D. J. Wahl, P. Zhang, Y. Jian, S. Bonora, M. V. Sarunic, R. J. Zawadzki, "Wavefront sensorless adaptive optics versus sensor-based adaptive optics for in vivo fluorescence retinal imaging,” presented at SPIE BIOS in Adaptive Optics and Wavefront Control for Biological Systems III, Photonics West, Jan 27- Feb 1, 2017.
  9. M. J. Ju, S. Lee, M. Heisler, R. J. Zawadzki, S. Bonora, Y. Jian, M. V. Sarunic, “Clinical-grade Adaptive Optics Swept Source Optical Coherence Tomography", presented at ARVO Annual meeting, Seattle WA, May 1-5, 2016.
  10. Y. Jian, D. Wahl, M.J. Ju, R.J. Zawadzki, S. Bonora, M. V. Sarunic, “Progress on Wavefront Sensorless Adaptive Optics for Preclinical Retinal Imaging", presented at ARVO Annual meeting, Seattle WA, May 1-5, 2016.
  11. Z. Mammo, M. Heisler, C. Bala, S. Lee, P. Mackenzie, S. Schendel, A. Merkur, E. Navajas, W. H. Morgan, M. V. Sarunic, “Quantitative Speckle-variance Optical Coherence Tomography of Radial Periparpillary Capillaries in Glaucoma", presented at ARVO Annual meeting, Seattle WA, May 1-5, 2016.
  12. M. Heisler, P. Prentasic, S. Lee, Z. Mammo, A. Ibrahim, A. Merkur, E. Navajas, M. F. Beg, S. Loncaric, M. V. Sarunic, “Automated Quantitative Analysis of the Fovea using OCT Angiography ", presented at ARVO Annual meeting, Seattle WA, May 1-5, 2016.
  13. S. Lee, K. Popuri, J. A. Matsubara, B. Eadie, A. Merkur, P. Mackenzie, M. V. Sarunic, M. F. Beg, “Novel fshape mapping of peripapillary RNFL and choroidal thickness for group-wise comparison of glaucoma and healthy aging", presented at ARVO Annual meeting, Seattle WA, May 1-5, 2016.
  14. J. A. Matsubara, V. Hirsch-Reinshagen, I. R. Mackenzie, R. G-Y. Hsiung, B. Eadie, S. Lee, K. Jiang, M. V. Sarunic, M. F. Beg, J. Z. Cui “Amyloid beta (Aβ) immunoreactivity in the retina of Alzheimer’s disease (AD) and non-AD dementias: A pilot study", presented at ARVO Annual meeting, Seattle WA, May 1-5, 2016.
  15. Y. Jian, S. Lee, M. Cua, D. Miao, S. Bonora, R. J. Zawakzi, M. V. Sarunic, "Adaptive Optics OCT using 1060nm swept source and dual deformable lenses for human retinal imaging,” presented at SPIE BIOS in Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XX, Photonics West, Feb 13-18, 2017.
  16. Z. Mammo, C. Bala, J. Xu, P. Yu, Y. Jian, D. Albiani, A. Kirker, A. Merkur, D.Y. Yu, M. V. Sarunic, “Evaluating the Utility of Speckle-Variance Optical Coherence Tomography for Assessing the Human Macula", presented at ARVO Annual meeting, Seattle WA, May 3-7, 2015.
  17. D. Wahl, Y. Jian, R. J. Zawadzki, M. V. Sarunic, “Wavefront sensorless adaptive optics fluorescence imaging in mouse retina", presented at ARVO Annual meeting, Seattle WA, May 3-7, 2015.
  18. Y. Jian, K.S.K. Wong, M. Cua, S. Bonora, R.J. Zawadzki, M. V. Sarunic, “Wavefront sensorless adaptive optics OCT with real time axial tracking for imaging human retina", presented at ARVO Annual meeting, Seattle WA, May 3-7, 2015.
  19. S. Lee, M. Heisler, P. Mackenzie, M.V. arunic, M.F. Beg, “Quantitative longitudinal and cross-sectional shape analysis of retina by registration", presented at ARVO Annual meeting, Seattle WA, May 3-7, 2015.
  20. A. Zam, P. Zhang, Y. Jian, M. V. Sarunic, E. N. Pugh, R. J. Zawadzki, “Evaluation of AO-OCT and pv-OCT for detailed study of blood flow in mouse retinal capillaries and vessels", presented at ARVO Annual meeting, Orlando FL, May 4-8, 2014.
  21. J. Xu, S. Han, M. Cua, M. Young, A. Merkur, A. Kirker, D. Albiani, F. Forooghian, P. Mackenzie, M. V. Sarunic, “Real-time acquisition and display of flow contrast in macula and ONH with speckle variance OCT", presented at ARVO Annual meeting, Orlando FL, May 4-8, 2014.
  22. P. Zhang, A. Zam, Y. Jian, M. V. Sarunic, E. N. Pugh, R. J. Zawadkzi, “Multimodal retinal imaging platform for evaluating retinal morphology in living mice", presented at ARVO Annual meeting, Orlando FL, May 4-8, 2014.
  23. S. Lee, S. Han, M. Young, M. F. Beg, M. V. Sarunic, P. Mackenzie, “Anterior lamina cribrosa morphometrics in myopic glaucoma", presented at ARVO Annual meeting, Orlando FL, May 4-8, 2014.
  24. Y. Jian, S. Lee, K. Wong, A. Zam, P. Zhang, R. J. Zawadzki, M. V. Sarunic, “In vivo real time wavefront sensorless adaptive optics optical coherence tomography for mouse retinal imaging and visualization of the response to laser exposure", presented at ARVO Annual meeting, Orlando FL, May 4-8, 2014.
  25. S. Lee, S.X. Han, M. Young, P. J. Mackenzie, M. F. Beg, M. V. Sarunic, “Optic nerve head and peripapillary morphometrics in myopic glaucoma”, presented at ARVO Annual meeting, Seattle WA, May 5-9, 2013.
  26. Y. Jian, J. S. Werner, K. Wong, E. N. Pugh, M. V. Sarunic, R. J. Zawadzki, “Imaging the mouse retina in vivo using Adaptive Optics - Fourier Domain Optical Coherence Tomography”, presented at ARVO Annual meeting, Seattle WA, May 5-9, 2013.
  27. R. J. Zawadzki, Y. Jian, M. V. Sarunic, J. S. Werner, E. N. Pugh, “Application of phase variance optical coherence tomography for in-vivo imaging of retinal micro-vasculature in mice”, presented at ARVO Annual meeting, Seattle WA, May 5-9, 2013.
  28. E. Lebed, S. Lee, S. X. Han, P. Mackenzie, A. Trouve, M. V. Sarunic, M. F. Beg, “Novel method for registration and statistical analysis of volumetric retinal OCT data using surface currents”, presented at ARVO Annual meeting, Seattle WA, May 5-9, 2013.
  29. M. V. Sarunic, M. Young, E. Lebed, A. B. Wu, M. F. Beg, “Rapid Volumetric OCT Image Acquisition Using Compressive Sampling”, presented at Association of Research in Vision and Ophthalmology (ARVO), Fort Lauderdale, FL, May 1-5, 2011.
  30. L. Szczygiel, A. Issaei, N. Javaheri, L. L. Molday, R. S. Molday, M. V. Sarunic, “Comparative Quantification Of Lipofuscin Deposits In the ABCA4 Knock Out Mouse Model Of STGD1 Utilizing Fluorescence Confocal Scanning Laser Ophthalmoscopy And Fourier Domain Optical Coherence Tomography”, presented at Association of Research in Vision and Ophthalmology (ARVO), Fort Lauderdale, FL, May 1-5, 2011.
  31. H. U. Saragovi, M. V. Sarunic, P. Dergham, H. Nedev, A. Galan, M. Young, D. Sivori, K. E. Neet, F. S. Lerner, Y. Bai, “A Balance of Neuroprotective versus Neurotoxic Mechanisms in Experimental and Human Glaucoma”, presented at Association of Research in Vision and Ophthalmology (ARVO), Fort Lauderdale, FL, May 1-5, 2011.
  32. M. Young, S. Lee, M. F. Beg, P. J. Mackenzie, M. V. Sarunic, “High Speed Morphometric Imaging of the Optic Nerve Head with 1µm OCT”, presented at Association of Research in Vision and Ophthalmology (ARVO), Fort Lauderdale, FL, May 1-5, 2011.
  33. M. Young, S. Lee, E. Gibson, M. Rateb, M.F. Beg, P.J. Mackenzie, M.V. Sarunic, “Comparison of Reference Planes in Volumetric SD OCT for Optic Nerve Head Morphometry”, presented at Assoc. of Research in Vision and Ophthalmology (ARVO), Fort Lauderdale, FL, May 2-6, 2010.
  34. H. Saragovi, Z. Shi, Y. Zhuo, K.E. Neet, J. Xu, M.V. Sarunic, Y. Bai, “In Experimental Glaucoma and in Optic Nerve Axotomy, Manipulation of the p75 Neurotrophin Receptor Signals Activate Neuro-Gial Mechanisms Causing RGC Neuroprotection or Increased RGC Damage”, presented at ARVO, Fort Lauderdale, FL, May 2-6, 2010.
  35. M.V. Sarunic, J. Xu, Y. Bai, S. Lee, M.F. Beg, H. Saragovi, “Longitudinal Spectral Domain OCT Evaluation During Retinal Neurodegeneration Has Quantitative Predictive Value for Studies of Neuroprotection”, presented at ARVO, Ft Lauderdale, FL, May 2-6, 2010.
  36. J. Xu, A. Yazdanpanah, M. Young, S. Lee, E. Gibson, Y. Bai, Z. Shi, M.F. Beg, H.U. Saragovi, and M.V. Sarunic, “Non-invasive Quantitative Measurement of Axotomy-induced Retinal Degeneration in Rats Using Fourier Domain OCT”, presented at ARVO, Fort Lauderdale, FL, May 2-7, 2009.
  37. M.V. Sarunic, J. Xu, M.H. Khorasani, J.N.B. Koo, L.L. Molday, R.S. Molday, “Investigation of Retinal Degeneration in Mice Using Fourier Domain Optical Coherence Tomography”, presented at ARVO, Fort Lauderdale, FL, April 26-May1, 2008.
  38. E. J. McDowell, M.V. Sarunic, C. Yang, “1/f noise in spectrometer-based optical coherence tomography”, presented at OSA Biomedical Optics Topical Meeting, March 16-19, 2008.
  39. E. J. McDowell, M.V. Sarunic, C. Yang, “1/f noise in spectrometer-based optical coherence tomography”, presented at SPIE Coherence Domain Optical Methods and OCT in Biomedicine XII, Photonics West, Jan 19-24, 2008.
  40. E. J. McDowell, Z. Yaqoob, M.V. Sarunic, C. Yang, “Choice of image construction algorithm impacts signal to noise ratio in 3x3 fiber coupler based homodyne optical coherence tomography”, presented at SPIE Coherence Domain Optical Methods and OCT in Biomedicine XI, Photonics West, Jan 20-28, 2007.
  41. M. V. Sarunic, B. E. Applegate, J. A. Izatt, “Quadrature Projection Full Range High Speed FDOCT,” presented at ARVO 2006 Annual Meeting, April 30-May 4, 2006.
  42. M. V. Sarunic, B. E. Applegate, J. A. Izatt, “Quadrature Projection Complex Conjugate Resolved FDOCT For Real Time Full Depth Imaging,” presented at OSA Biomedical Optics Topical Meeting, March 19-23, 2006.
  43. M. V. Sarunic, M.A. Choma, C. Yang, J.A. Izatt, “Instantaneous Complex Spectral Domain OCT Using 3x3 Fiber Couplers,” presented at OSA BIOMED topical meeting, Biomedical Optical Spectroscopy and Diagnostics (BOSD), April 14-17, 2004.